The TFE-induced transient native-like structure of the intrinsically disordered σσ704 domain of Escherichia coli RNA polymerase

Rok publikacji: 2014
Wydawca:  European Biophysics Journal, 2014, 100, 23-31
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P. Kaczka, M. Winiewska, I. Zhukov, B. Rempoła, K. Bolewska, T. Łoziński, A. Ejchart, A. Poznańska, K. L. Wierzchowski, J. Poznański
The transient folding of domain 4 of an E. coli RNA polymerase σ70 subunit (rECσ704) induced by an increasing concentration of 2,2,2-trifluoroethanol (TFE) in an aqueous solution was monitored by means of CD and heteronuclear NMR spectroscopy. NMR data, collected at a 30 % TFE, allowed the estimation of the population of a locally folded rECσ704 structure (CSI descriptors) and of local backbone dynamics (15N relaxation). The spontaneous organization of the helical regions of the initially unfolded protein into a TFE-induced 3D structure was revealed from structural constraints deduced from 15N- to 13C-edited NOESY spectra. In accordance with all the applied criteria, three highly populated α-helical regions, separated by much more flexible fragments, form a transient HLHTH motif resembling those found in PDB structures resolved for homologous proteins. All the data taken together demonstrate that TFE induces a transient native-like structure in the intrinsically disordered protein.

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